Thursday, January 17, 2019

From the inbox: PhD Position at SLU Stockholm

PhD student, development eDNA approaches for fish monitoring

Do you want to work in an inspiring environment and contribute to the sustainable use of our oceans, lakes and watercourses? We at the Department of Aquatic resources (SLU Aqua) are passionate about our vision "Viable fish stocks in healthy waters". We´re expanding, searching for employees who want to develop themselves and make a difference together with us. The Department of Aquatic Resources conducts environmental monitoring and assessment, consulting, research and education in aquatic ecology with focus on fish and shellfish. The department is SLU's largest and has more than 180 employees at three main locations: Lysekil, Öregrund and Stockholm (Drottningholm), as well as four field stations. The department is highly focused on data collection and analysis of fish, fisheries and ecosystems, and is characterized by intensive collaborations with industry, public agencies and NGO:s. This creates a vital research environment and gives us unique opportunities to develop knowledge with high societal impact.

We look forward to receiving your application

eDNA is a rapidly developing tool for science-based management of aquatic environments. However, methodological issues remain before quantitative eDNA can be used practically. The northern pike is one of the most important recreational fish species in Sweden, as well as a keystone predator important for ecosystem health and functioning. Despite its ecological and socioeconomic importance, pike has been neglected in monitoring. One reason being the low catchability of pike using traditional monitoring methods. This PhD project will focus on developing and evaluating the performance of eDNA-based methods for monitoring northern pike.

The position entails planning and executing a combination of controlled laboratory and outdoor experiments in fish tanks and ponds, fieldwork (including electrofishing and rod-fishing) and modern molecular genetic techniques to develop and systematically evaluate the usability of an eDNA approach to provide non-invasive quantitative estimates of northern pike abundance.

We are looking for a motivated and enthusiastic person with an interest in molecular ecology, ecological genomics, fish monitoring and aquatic biology. Preferably, the applicant’s university degree focuses on genetics, molecular biology, ecology or fish biology. The applicant is expected to be fluent in English, both in speech and writing. Emphasis will be placed on personal skills, such as the ability to work independently as well as in a group, attention to detail and an ability to prioritize and multitask. Documented experience of practical work with molecular methods or in experimental ecology is an advantage.

Place of work:           
Drottningholm, Stockholm.

Forms for funding or employment:
Employment 4 years.

Starting date:
1 April 2019 or as agreed.

We welcome your application no later than 2019-03-01, use this link.

A person has basic eligibility for third cycle education if he or she has taken a second cycle qualification or has completed course requirements of at least 240 higher education credits, including at least 60 higher education credits at second cycle education. Upper secondary school grades equivalent to English B/English 6 are a basic requirement. Selection among applicants meeting the requirements is made with reference to written application including curriculum vitae, copies of degrees and transcripts of academic records, one copy of the dissertation for masters or undergraduate degree, a list of at least two references familiar with the applicant's qualifications, certified knowledge of the English language and an interview. Please observe that applicant/s chosen to participate in an interview shall hand in certified true copies of certificates, diplomas and transcripts from previous studies at an internationally recognized higher education institution (university or university college) and transcripts in connection to the interview. If the applicant is a foreign citizen we require a certified copy of the page in your passport with your personal data and photogragphy.

The Swedish University of Agricultural Sciences (SLU) develops the understanding and sustainable use and management of biological natural resources. The university ranks well internationally within its subject areas. SLU is a research-intensive university that also offers unique degree programmes in for example rural development and natural resource management, environmental economics, animal science and landscape architecture. 
SLU has just over 3,000 employees, 5,000 students and a turnover of SEK 3 billion. The university has invested heavily in a modern, attractive environment on its campuses in Alnarp, Umeå and Uppsala.

SLU is an equal opportunity employer.

Monday, January 7, 2019

Reminder - Abstract submission deadline iBOL Conference

Happy New Year!

I would like to remind you all that the deadline for abstract submission to the upcoming iBOL Conference is January 15! Therefore, if you plan to attend, please submit your abstract as soon as you can. We need this early deadline in order to run a proper review process of all abstracts before publication in the journal Genome.

Although abstracts can be submitted before registration, please do not hesitate to register. Payment can be made by credit card or invoice.

Interested in news about the conference? Check out our news section and follow @norwbol on Twitter.

More on the program and invited speakers on our website

Best regards,

Torbjørn Ekrem, PhD
Professor of biosystematics
NTNU University Museum, Department of Natural History

Wednesday, November 28, 2018

Barcode Conference 2019 - Abstract submission open


Just received this:

Dear friends and colleagues,

It is a pleasure to announce that abstract submission for the upcoming Barcode of Life Conference now is open. For guidelines and access to the submission portal, please visit the conference website:  Abstract submission deadline is January 15, 2019

Please consider registering for the conference as soon as possible (space is limited). More information on how to register here.

We are eager to spread news about the conference to as many potential participants as possible. I would appreciate it if you forward this message in your network, and maybe point to the list of interesting session themes and outstanding plenary speakers.

Thank you and best wishes

Thursday, November 15, 2018

Global Taxonomy Initiative Forum

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The Global Taxonomy Initiative Forum will take place on 16 November immediately before the opening day of the UN Conference on Biodiversity in Egypt. 

The provisional agenda is accessible at and the notification to Parties and observers on this event can be found at

The Forum will be captured and shared via video streaming on the CBD Facebook and other social media. It will feature several talks on DNA barcoding and taxonomy capacity building.

Friday, November 9, 2018

Professor/Associate Professor in Zoology (marine invertebrates) at Tromsø University Museum

Tromsø University Museum, UiT – The Arctic University of Norway, has a permanent position vacant as Professor/Associate professor in Zoology (marine invertebrates). The position is attached to the Department of Natural Sciences.
Further information about the position is available by contacting the Head of Department Torbjørn Alm or Museum Director Lena Aarekol.

The position’s affiliation
Tromsø University Museum has two academic departments, the Department of Cultural Sciences and the Department of Natural Sciences, with the additional units Polar Museum, MS Polstjerna and Tromsø Arctic-Alpine Botanic Garden. This position is at the Department of Natural Sciences, which is responsible for developing and maintaining scientific collections of natural objects (animals, plants, fossils and minerals) as well as public outreach, including the Tromsø Arctic-Alpine Botanical Garden. The Department has a permanent staff of 16, of which eight are in academic positions. At the moment, five PhD students, one post doc and two researchers are affiliated with the Department.

The Department is involved in research within the fields of ancient DNA, barcoding, taxonomy, phylogeography, ecology, palaeontology and biodiversity. The main focus is on northern Norway and the Arctic. The Department has well-established laboratory facilities for modern and ancient molecular biology, palynology, and palaeontology. For more information about the Tromsø University Museum’s activities, visit: .

The position’s field of research/field of work
Tromsø University Museum has a long tradition in research on various marine invertebrates. The successful applicant for the position is expected to carry out research in any taxonomic group of marine invertebrates. Relevant groups are those living in our preferred target region – along the coast of northern Norway and the Arctic. Applicants may focus their research in one or more of the fields biosystematics, biogeography, biodiversity, ecology and molecular genetics.

The position’s duties include research and research-based activities, collection management, dissemination and administration. We also encourage the teaching and supervision of Master and PhD students. This position will include responsibility for the marine invertebrate collections, both within and outside her/his own research field, and curation of other collections within zoology is expected.

The appointee is expected to participate actively in a broad range of museum outreach activities, such as public communications, media interactions and exhibitions. The appointee is furthermore expected to collaborate and seek collaboration within the institution as well as nationally and internationally. She/he is expected to be active in applying for external research funding.

Qualification requirements
The successful candidate is internationally recognized within the field, with scientific merits beyond doctoral level. Research experience within biosystematics/taxonomy of a relevant taxonomic group is required. Experience in museum work, especially scientific collections, is a further asset. A successful track record in applying for external funding and/or a high potential for external funding will be given emphasis when evaluating applicants. Personal suitability will also be evaluated.

For a position as associate professor, you should have a good publication record in terms of papers in peer-reviewed journals and other relevant international publication channels. Documented external funding, experience with research leadership and relevant collaboration with industry will be rated positively. As an associate professor, we expect you to aim at developing yourself further to a full professor.

For a position as professor, you should demonstrate international experience and have a strong publication record in terms of papers in peer-reviewed journals and other relevant international publication channels. You should document the ability to obtain external funding from relevant sources, and be able to initiate and lead research at a high international level. We will also assess outreach, network and teaching and supervision activities.

Applicants should submit a covering letter describing their interest in the position, including, but not restricted to, experience with natural history collections, the development of the zoological collection and future research plans.
The applicants must be able to document teaching qualifications in the form of university-level teaching seminars, other teaching education or through having developed a teaching portfolio. Alternatively, after carrying out an assessment of the applicant’s practical teaching skills, the committee may determine that this may be regarded as of equal value to formal teaching qualifications. For further information about requirements for teaching qualifications, refer to the website about Teaching Portfolios.

Applicants should have a good command of one of the Scandinavian languages and English. Applicants who do not have a good command of a Scandinavian language must be willing to learn Norwegian within a reasonable time period.

Working conditions
At UiT The Arctic University of Norway the allocation of working hours shall be flexible and allocated on a case by case basis.

As a general principle, every Professor and Associate Professor shall spend an equal amount of time on teaching and research and development work, after time spent on other duties has been deducted. As a norm the time resources spent on administrative duties constitutes 5 % for academic staff in this category of position.

Employees in permanent positions as Associate Professor have the right to apply for a paid sabbatical (research and development), cf. Guidelines for the allocation of R&D sabbatical (Only in Norwegian)

Moreover, applicants shall refer to the Guidelines for allocation of working hours in teaching and research positions (Only in Norwegian)

The successful applicant must be willing to engage himself/herself in the ongoing development of his/her discipline and the university as a whole.

The remuneration
The remuneration of a Professor is in accordance with the State salary scale code 1013 and for an Associate professor code 1011. A compulsory contribution of 2 % to the Norwegian Public Service Pension Fund will be deducted.

An expert committee will assess the applicants. The applicants who are assessed as the best qualified, will be called to an interview. The interview shall among other things aim to clarify the applicant’s personal suitability for the position. A trial lecture may also be held.

For the professor position, it is particularly important that the applicant can document academic activity at a high level over the previous six years in a way that points towards to the continuation of such activity in the future.

Applicants bring original certificates/diplomas and reference letter (work) to a interview.

Interim appointment 
If there are no applicants who are clearly qualified for permanent appointment, a temporary appointment for a period of no more than three years may be made, cf. statsansatteloven § 9 and Section 6-5 (1) of the Act relating to universities and university colleges. A permanent appointment shall be made upon application before the three-year period elapses on the basis of a new evaluation. The appointment will become permanent if the applicant is found to be suitably qualified.

In the event of an interim appointment on the basis of lacking teaching qualifications, the applicant must document teaching qualifications through developing a teaching portfolio before the three-year period elapses. The appointment will become permanent in the event that the applicant is found to be suitably qualified.

Gender balance 
Women are encouraged to apply. UiT The Arctic University of Norway wishes to increase the proportion of females in senior research positions. In the event that two or more applicants are found to be approximately equally qualified, female applicants will be given priority.

Submit your application in
The application documents (mentioned below) must be enclosed in Jobbnorge within the expiration of the application deadline. Documents to be considered must be certified and translated into Scandinavian or English.

The application must include:
  • Letter of application
  • CV (containing a complete overview of education, supervised professional training and professional work)
  • Certified copies of diplomas and reference letter
  • References with contact information
  • Documentation of English language proficiency
  • Teaching portfolio
  • Form for documentation of teaching qualifications (if you do not have a teaching portfolio)
  • List of works and description of these
The list of works shall contain the following information:
  • author(s), the work’s title
  • for articles: the journal’s name and volume, the first and last page of the article, year of publication
  • for publications: publisher, printer, year of publication, number of pages

Works- The applicant have to submit up to 10 works that are central to his/her production. Doctoral thesis is in this context regarded as one work.

In addition, the applicant shall provide a description of his/her scientific production stating which works he/she considers the most important and shall therefore be the main emphasis of the assessment. A brief description of the other listed works shall also be included to demonstrate depth of production. These descriptions shall be an attachment to the application.

Wednesday, October 10, 2018

My metabarcoding online course starts soon!

We're going into another round of the Metabarcoding Course I developed a few years back. I just finished updating its modules especially given how fast the field develops.

Date: November 12, 2018 to December 09, 2018

This 4-week, web-based course will provide an overview of the state of current technology and the various platforms used. The course consists of a series of online lectures, readings, videos, and research exercises introducing different aspects of metabarcoding and environmental DNA research. We will also touch on the suite of bioinformatics tools available for sequence analysis and data interpretation.

We tried to cover as much as possible given the online format and the limited time participants usually have available to do such training. The course is designed for four weekly instructional hours. 

If you are interested and sign up quickly (by end of the week) you would be eligible for a $100 early bird discount :-)

Special discount $100 (code: DNA2018)

Friday, October 5, 2018

From the inbox: Postdoctoral Researcher and PhD Positions at University of Oulu

The University of Oulu is an international scientific community, with 14,000 students and approximately 3,000 employees. The strengths of the University are wide multidisciplinary study/research interests and modern research and study environment, as well as good cooperation with international educational and research institutes. More information.

The following full-time jobs are open in the Insect Genomic Systematics Group at the University of Oulu, Finland:

1.     Postdoctoral Researcher
2.     PhD student

Project description: Taxonomy, and its central concept ‘species’ in particular, underpin all biological research and are important in numerous other ways for humanity. Despite its crucial role, taxonomy has long been suffering from a complication termed the ‘taxonomic impediment’. At the core of this impediment has been our inability to efficiently document the vast biodiversity of Earth with the available resources and methods. At the same time, the majority of Earth’s biodiversity awaits discovery. Emergent new and powerful methods in DNA sequencing technology have enabled the acquisition of breathtaking amounts of genomic data from organisms in straightforward and fast ways. In this project, genomic methods, particularly anchored hybrid enrichment (AHE), will be applied to develop novel approaches to define species boundaries under different evolutionary circumstances and with taxonomically challenging groups of species. The aim is to point the way ahead towards an entirely DNA-based taxonomy, and fostering the integration of taxonomic principles and practices into the genomic era. The primary model taxa will be Lepidoptera (butterflies and moths) and, to a lesser extent, Symphyta (sawflies). Sympatric, allopatric, parapatric, and asexual taxa will be considered, because the geographic relationship between species and mode of reproduction have great theoretical and practical effects on species delimitation. Influence of sexual pheromones, chromosomal re-arrangements, ecological differentiation and gene flow on species delimitation will also be considered. The research will be conducted with extensive national and international collaboration. The project is financed by Academy of Finland. Principal Investigator of the project is Marko Mutanen (University of Oulu, Finland).

Duties: The postdoctoral researcher will participate in material collection (incl. fieldwork), laboratory analyses, data analyses (incl. bioinformatics), manuscript preparation and supervision of the PhD student. She/he is also expected to teach at the department at most 5 % of working time. While studies will be conducted in a team, capability for independent working is expected. The PhD student will participate in 3 – 4 separate research studies. She/he will participate and is expected to gain good skills in fieldwork, laboratory analyses, data analyses, bioinformatics and scientific writing. She/he will be a leading author in at least two research papers. She/he will be supervised by the team leader and other senior core team members.

Qualification and selection criteria: The postdoctoral researcher must have a PhD in evolutionary biology, ecology, genetics or related area. The PhD degree must have been reached before the start of the contract. The postdoctoral researcher is expected to be highly motivated, committed to the project, and to have excellent English communication (writing and speaking) skills. Previous experience and knowledge of the study organisms, taxonomy, systematics, phylogenetics, genomic methods or bioinformatics is considered as an advantage. The PhD student must reach the MSc degree in biology (or similar) before the start of the contract. She/he is highly motivated and committed to finish her/his PhD studies during the funding period, and has good English communication skills. All above-mentioned experience and relevant skills are considered as an advantage.

Duration and terms of employment: The postdoctoral researcher: The earliest possible starting date is 1st of January, 2019. Optimally, the position is filled not later than 1st of March, 2019. The duration of the contract is 3 years (a short continuation to this is possible). The salary will be based on the levels 5 – 6 of the demand level chart for teaching and research staff of Finnish universities. In addition, a salary component based on personal work performance will be paid (maximum of 46.3 % of the job-specific component). The gross salary will be 3,100 – 3,600 euros/month. The PhD student will start earliest on 1st of January 2019, and not later than 1st of March 2019. The maximal duration is 3 years and 8 months. The last possible end date of the contract is 31st August 2022, so the delayed start will shorten the funding period. The salary will be based on the levels 2 – 4 of the demand level chart for teaching and research staff of Finnish universities. In addition, a salary component based on personal work performance will be paid (maximum of 46.3 % of the job-specific component). The gross salary will be about 2,300 – 2,500 euros/month. The six-month trial periods are applied in the beginning of employments. Healthcare is provided by the employer.

Inquiries: For further information, please contact Marko Mutanen (phone: +358 40 824 6749).

How to apply: Submit your application online latest on Thursday 1st of November 2018 at 24:00 (EET). The application must be submitted using the electronic application form with the following documents:
(1)   Motivation letter where the reasons for interest in this position are clearly indicated (max. 1 page). In the motivation letter, indicate clearly which position (PhD student or postdoctoral researcher) you apply.
(2)   CV formatted according to the guidelines of the Finnish National Board on Research Integrity (TENK)
(3)   List of publications formatted according to the guidelines of the Academy of Finland 
(4)   Contact information of at least two referees (recommended but not mandatory) and copy of the MSc or PhD degree as applicable.